PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g093540.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 278aa    MW: 31327.8 Da    PI: 4.4139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g093540.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.52.8e-1913101197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk     ++++s  + +p +f+e+   +   + t +l+ + gr W+v +  +k ++++++t+GW++F+++++L +g+ ++F +dg+++f   v+
  Csa05g093540.2  13 FFKLY--VSHTASESFAIPLSFMEHLADP--LPNTAKLQGTGGRDWTVSM--KKIRDGVYFTAGWSKFAQDHELVDGEYLTFVYDGNRTF--EVS 99 
                     56666..334444559*******666655..889****************..*********************************98888..777 PP

                     EE CS
              B3  96 vf 97 
                     vf
  Csa05g093540.2 100 VF 101
                     76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-2211105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-2211103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.66211104IPR003340B3 DNA binding domain
CDDcd100172.92E-1811101No hitNo description
PfamPF023622.6E-1613101IPR003340B3 DNA binding domain
SMARTSM010191.0E-2013104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-8178269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-6178269IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.7182272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAEHDDDVLL PRFFKLYVSH TASESFAIPL SFMEHLADPL PNTAKLQGTG GRDWTVSMKK  60
IRDGVYFTAG WSKFAQDHEL VDGEYLTFVY DGNRTFEVSV FGRLGCRETR AEAETLELSG  120
SSSDSEEDEE EPSTDVEYDI SLGEDEEISQ SLSPLEEEET ESDAAAVFEG NVDMKALTNP  180
HFPTTLKDRN TELIIPASVV RENELIFGDS VKYIDGEGTL VGLRCKWAVD TVRFKGWNRI  240
CRRNKLEKHQ DTVECELLHD REKMVHSIRV HVIRGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-221210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512501.10.0PREDICTED: B3 domain-containing protein REM20-like isoform X1
SwissprotQ8LAV51e-117REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM71e-154R0HPM7_9BRAS; Uncharacterized protein
STRINGscaffold_502422.11e-132(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.16e-58B3 family protein